Systems-Level Modelling of Microbial Communities - read free eBook in online reader or directly download on the web page. Select files or add your book in reader. Download and read online ebook Systems-Level Modelling of Microbial Communities write by Aarthi Ravikrishnan. This book was released on 2018-09-06. Systems-Level Modelling of Microbial Communities available in PDF, EPUB and Kindle. Systems-Level Modelling of Microbial Communities: Theory and Practice introduces various aspects of modelling microbial communities and presents a detailed overview of the computational methods which have been developed in this area. This book is aimed at researchers in the field of computational/systems biology as well as biologists/experimentalists studying microbial communities, who are keen on embracing the concepts of computational modelling. The primary focus of this book is on methods for modelling interactions between micro-organisms in a community, with special emphasis on constraint-based and network-based modelling techniques. A brief overview of population- and agent-based modelling is also presented. Lastly, it covers the experimental methods to understand microbial communities, and provides an outlook on how the field may evolve in the coming years.
Systems-Level Modelling of Microbial Communities
Systems-Level Modelling of Microbial Communities - read free eBook in online reader or directly download on the web page. Select files or add your book in reader. Download and read online ebook Systems-Level Modelling of Microbial Communities write by Aarthi Ravikrishnan. This book was released on 2018-09-06. Systems-Level Modelling of Microbial Communities available in PDF, EPUB and Kindle. Overview of ecological principles underlying natural and synthetic microbial communities Techniques to infer relationships in microbial communities from metagenomic sequences Detailed account of constraint-based methods to decipher metabolic interactions in microbial communities Case studies to illustrate applications of various community modelling approaches Brief outline of experimental methods to understand and characterise microbial communities
An Introduction to Computational Systems Biology
An Introduction to Computational Systems Biology - read free eBook in online reader or directly download on the web page. Select files or add your book in reader. Download and read online ebook An Introduction to Computational Systems Biology write by Karthik Raman. This book was released on 2021-05-30. An Introduction to Computational Systems Biology available in PDF, EPUB and Kindle. This book delivers a comprehensive and insightful account of applying mathematical modelling approaches to very large biological systems and networks—a fundamental aspect of computational systems biology. The book covers key modelling paradigms in detail, while at the same time retaining a simplicity that will appeal to those from less quantitative fields. Key Features: A hands-on approach to modelling Covers a broad spectrum of modelling, from static networks to dynamic models and constraint-based models Thoughtful exercises to test and enable understanding of concepts State-of-the-art chapters on exciting new developments, like community modelling and biological circuit design Emphasis on coding and software tools for systems biology Companion website featuring lecture videos, figure slides, codes, supplementary exercises, further reading, and appendices: https://ramanlab.github.io/SysBioBook/ An Introduction to Computational Systems Biology: Systems-Level Modelling of Cellular Networks is highly multi-disciplinary and will appeal to biologists, engineers, computer scientists, mathematicians and others.
Systems biology and ecology of microbial mat communities
Systems biology and ecology of microbial mat communities - read free eBook in online reader or directly download on the web page. Select files or add your book in reader. Download and read online ebook Systems biology and ecology of microbial mat communities write by Martin G. Klotz. This book was released on 2016-04-11. Systems biology and ecology of microbial mat communities available in PDF, EPUB and Kindle. Microbial mat communities consist of dense populations of microorganisms embedded in exopolymers and/or biomineralized solid phases, and are often found in mm-cm thick assemblages, which can be stratified due to environmental gradients such as light, oxygen or sulfide. Microbial mat communities are commonly observed under extreme environmental conditions, deriving energy primarily from light and/or reduced chemicals to drive autotrophic fixation of carbon dioxide. Microbial mat ecosystems are regarded as living analogues of primordial systems on Earth, and they often form perennial structures with conspicuous stratifications of microbial populations that can be studied in situ under stable conditions for many years. Consequently, microbial mat communities are ideal natural laboratories and represent excellent model systems for studying microbial community structure and function, microbial dynamics and interactions, and discovery of new microorganisms with novel metabolic pathways potentially useful in future industrial and/or medical applications. Due to their relative simplicity and organization, microbial mat communities are often excellent testing grounds for new technologies in microbiology including micro-sensor analysis, stable isotope methodology and modern genomics. Integrative studies of microbial mat communities that combine modern biogeochemical and molecular biological methods with traditional microbiology, macro-ecological approaches, and community network modeling will provide new and detailed insights regarding the systems biology of microbial mats and the complex interplay among individual populations and their physicochemical environment. These processes ultimately control the biogeochemical cycling of energy and/or nutrients in microbial systems. Similarities in microbial community function across different types of communities from highly disparate environments may provide a deeper basis for understanding microbial community dynamics and the ecological role of specific microbial populations. Approaches and concepts developed in highly-constrained, relatively stable natural communities may also provide insights useful for studying and understanding more complex microbial communities.
Systems Biology of Microbial Communities
Systems Biology of Microbial Communities - read free eBook in online reader or directly download on the web page. Select files or add your book in reader. Download and read online ebook Systems Biology of Microbial Communities write by . This book was released on 2008. Systems Biology of Microbial Communities available in PDF, EPUB and Kindle. Microbes exist naturally in a wide range of environments, spanning the extremes of high acidity and high temperature to soil and the ocean, in communities where their interactions are significant. We present a practical discussion of three different approaches for modeling microbial communities: rate equations, individual-based modeling, and population dynamics. We illustrate the approaches with detailed examples. Each approach is best fit to different levels of system representation, and they have different needs for detailed biological input. Thus, this set of approaches is able to address the operation and function of microbial communities on a wide range of organizational levels.
